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The automatic segmentation imaging workflow described was developed using the ImageJ/Fiji plateform [51], using H, S and V segmentation [50]. The whole workflow is freely downloadable and easily implementable as an ImageJ/Fiji plugin ( =sharing). After loading the plugin developed in the dedicated directory of Fiji, you simply need to open it and to answer 8 questions (Additional File 1) to define the desired output data set. Prior to this, you are asked which directory to use to load the input images and in which directory to put the output images and the results tables.
The Oracle Cloud Infrastructure object is downloaded to the local host. The object is a TAR archive which contains a boot volume of the instance in QCOW2 format and a JSON file containing metadata related to the instance. 59ce067264
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